Package index
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as.matrix(<mrf_penalty>) - Convert a MRF penalty object to a matrix
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as_mrf_penalty() - Create a
"mrf_penalty"object from a matrix and a config -
get_config() - Extract configuration details of an MRF penalty
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get_labels() - Extract MRF node labels from an MRF penalty
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get_model() - Extract the model type and parameters from an MRF penalty
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get_mrf() - Extract a fitted MRF
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get_obj() - Extract the original object used to construct an MRF penalty
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get_penalty() - Extract a MRF penalty matrix
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get_type() - Extract the type of MRF from the penalty
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mrf_config() - MRF penalty configuration data
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mrf_penalty() - Markov Random Field Penalty
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mrf_penalty(<SpatialPolygons>) - MRF penalty from a SpatialPolygons
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mrf_penalty(<SpatialPolygonsDataFrame>) - MRF penalty from a SpatialPoylgonsDataFrame
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mrf_penalty(<dendrogram>) - MRF penalty from a dendrogram
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mrf_penalty(<factor>) - Fully connected graph and random effect MRF penalties from a factor
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mrf_penalty(<hclust>) - MRF penalty from a hclust object
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mrf_penalty(<numeric>) - Continuous-time random walk MRF penalty from a numeric vector
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mrf_penalty(<phylo>) - MRF penalty from a phylogeny
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mrf_penalty(<phylo4>) - MRF penalty from a phylogeny from a phylo4 object
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mrf_penalty(<sf>) - MRF penalty from polygon or multi-polygon simple features
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vis()visualise() - Visualize a data set or object
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visualize(<cyclic_mrf_penalty>) - Visualizing penalty matrix or graph object for a cyclic 1D MRF
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visualize(<fully_connected_graph_mrf_penalty>) - Plot a thing
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visualize(<sequential_mrf_penalty>) - Plot a thing
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visualize(<tree_mrf_penalty>) - Plot a thing